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BITS '09 Sixth Annual Meeting of the Bioinformatics Italian Society March 18 - 20, 2009, Genoa, Italy |
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List of presentations
Here, all presentations from authors that agreed to have them published in the
BITS09 site will be made available, grouped by session.
Sessions will be listed cronologically.
All presentations are formatted as PDF files. You are kindly requested to make
a personal use only, cite the source and the authors and do not redistribute,
unless an explicit consensus from the authors is granted.
Not all presentations are currently linked, some of them will be added
to the site later. Stay tuned!
| Session 1: Clinical Bioinformatics and Biomedical Informatics | |
| Unsupervised joint analysis of arrayCGH, gene expression data and supplementary features Steinhoff C, Pardo M, Vingron M |
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| Identifying the Hypoxia Signature of Neuroblastoma via Regularization. Barla A, Fardin P, Rosasco L, Mosci S, Verri A, Varesio L |
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| Genomic Instability Revealed by Ultra-deep Sequencing of a Human Ultraconserved Region De Grassi A, Segala C, Volorio S, Bertario L, Radice P, Bernard L, Ciccarelli FD |
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| Session 2: Databases, ontologies, tools and applications | |
| Improved Gene Ontology annotation predictions through Bayesian network post-processing Tagliasacchi M, Masseroli M |
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| engineDB: a Repository of Functional Analogue Gene Products De Sario G, Tulipano A, Gisel A |
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| An integrated bioinformatic platform for SNPs detection: the test case of the pig genome Fronza R, Fontanesi L, Russo V, Casadio R |
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| Enhancing Graph Database Indexing By Suffix Tree Structure Bonnici V, Di Natale R, Ferro A, Giugno R, Mongiovi M, Pigola G, Pulvirenti A, Shasha D |
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| Session 3: Networks and Systems Biology I | |
| Estimating the solution space of Metabolic Networks Braunstein A, Mulet R, Pagnani A |
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| Multiplexing and demultiplexing signals by E. coli Pasotti L, Quattrocelli M, Galli D, Cusella De Angelis MG, Magni P |
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| Simulating signaling pathways: the motile photoresponse of H. salinarum as a case study Felicioli C, Cangelosi D, Cercignani G, Chiarugi D, Deiana N, Fabbiano S, Freschi L, Fulgentini L, Lucia S, Marangoni R |
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| Session 4: Networks and Systems Biology II | |
| Genome-Wide Survey of mixed MicroRNA / Transcription Factor Feed-Forward Regulatory Circuits in Human Re A, Corą D, Taverna D and Caselle M |
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| Data fusion based gene function prediction using ensemble methods Re M and Valentini G |
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| Pathway analysis in proteomics Restuccia U, Fung E, Muzio M, Zubarev R, Bachi A |
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| Session 5: Protein structure and function and Computational Proteomics | |
| Identification of residue contacts in protein/protein interaction from multi-species data Weigt M, White RA, Szurmant H, Hoch JA, Hwa T |
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| Comparison of proteins flexibilities by self-organizing maps: the test case of SH3 and its mutants Fraccalvieri D, Pandini A, Bonati L |
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| 3D-Structure Prediction of the Modular Protein Sialoadhesin Using a Multi-step Modelling Strategy Corrada D, D'Ursi P, Botti S, Luperini A, Milanesi L, Rovida E |
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| Session 6: Transcriptomics gene expression and microarray analysis I | |
| Detection of alternative splicing in Vitis vinifera and validation by short sequencing reads Picardi E, Horner D, Chiara M, Pesole G |
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| A transcriptional sketch of a human breast cancer by 454 deep sequencing Guffanti A, Iacono M, Pelucchi P, Kim N, Soldą G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Rossi Bernardi L, Albertini A, Lee C, John S. Mattick JS, Zucchi I & de Bellis G |
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| Session 7: Transcriptomics gene expression and microarray analysis II | |
| A bioinformatics pipeline for microarray analysis: from cell models to breast cancer classification Isella C, Renzulli T, Medico E |
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| A new clustering approach for learning transcriptional regulatory networks Archetti F, Giordani I, Mauri G, Messina E |
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| Discovering Relational Association Rules for the Characterization of UTR cis-regulatory modules Logisci C, Salvemini E, Turi A, Grillo G, Malerba D, D'Elia D |
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| Tutorial 1: Next-generation sequencing | |
| Next-Generation Sequencing (NGS): An Overview Ciccarelli FD |
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| Next Generation Sequencing: Applications De Grassi A |
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| Tutorial 2: Semantic Web applications and tools | |
| Perspectives of the application of semantic technologies in Bioinformatics Romano P |
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| Building semantic web tools for Bioinformatics Splendiani A |
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