|
BITS '09 Sixth Annual Meeting of the Bioinformatics Italian Society March 18 - 20, 2009, Genoa, Italy |
|
List of posters
| Group 1 (Wed March 18th, 2009) | |
| Topic: Clinical Bioinformatics and Biomedical Informatics | |
| Posters associated to oral communications | |
| G1.01 | Unsupervised joint analysis of arrayCGH, gene expression data and supplementary features Steinhoff C, Pardo M, Vingron M |
| G1.02 | Identifying the Hypoxia Signature of Neuroblastoma via Regularization. Barla A, Fardin P, Rosasco L, Mosci S, Verri A, Varesio L |
| G1.03 | Genomic Instability Revealed by Ultra-deep Sequencing of a Human Ultraconserved Region De Grassi A, Segala C, Volorio S, Bertario L, Radice P, Bernard L, Ciccarelli FD |
| Posters | |
| G1.04 | A flexible and distributed architecture for the integration, exchange, and management of clinical data Chirico M, Di Giorgio F, Ghigliotti L, Trifiletti P |
| G1.05 | A Strategy for Classifying Mass Spectra Ceccarelli M, d'Acierno A, Facchiano A |
| G1.06 | Analysis of Conserved Sequence Tags in the molecular diagnosis of cystic fibrosis Boccia A, Elce A, Tomaiuolo R, Castaldo G, Paolella G |
| G1.07 | Comparative genomics of the genus Burkholderia: insights into pathogens evolution Maida I, Perrin E, Papaleo MC, Emiliani G, Fani R, Fondi M |
| G1.08 | Gene Profiling of Liver Diseases De Giorgi V, Buonaguro L, Worschech A, Tornesello ML, Izzo F, Marincola FM, Buonaguro FM |
| G1.09 | Predicting the responsiveness of lysosomal human alpha-galactosidase to pharmacological chaperones Guarracino MR, Cammisa M, Correra A, Andreotti G,del Vecchio Blanco F, Riccio A, Cubellis MV |
| G1.10 | The Italian Network for Oncology Bioinformatics: goals, methodology and achievements Romano P, Parodi S, Crescenzi M |
| Topic: Databases, ontologies, tools and applications | |
| Posters associated to oral communications | |
| G1.11 | Improved Gene Ontology annotation predictions through Bayesian network post-processing Tagliasacchi M, Masseroli M |
| G1.12 | engineDB: a Repository of Functional Analogue Gene Products De Sario G, Tulipano A, Gisel A |
| G1.13 | An integrated bioinformatic platform for SNPs detection: the test case of the pig genome Fronza R, Fontanesi L, Russo V, Casadio R |
| G1.14 | Enhancing Graph Database Indexing By Suffix Tree Structure Bonnici V, Di Natale R, Ferro A, Giugno R, Mongiovi M, Pigola G, Pulvirenti A, Shasha D |
| Posters | |
| G1.15 | A Virtual Library for BITS Meetings Romano P |
| G1.16 | Automated data retrieval of alternative splicing sites and transcript isoformes in eukaryotic organisms Castrignanò T, D'Antonio M, D'Onorio De Meo P, Anselmo A, D'Erchia A, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Bonizzoni P, Pesole G |
| G1.17 | Bayesian Phylogenetic Inference in the LIBI Grid platform Vicario S, Mirto M, Aloisio G, Saccone C |
| G1.18 | CytokineDB: a database collecting biological information about the cytokine family Costantini S, Capone F, Miele M, Guerriero E, Napolitano M, Colonna G, Castello G |
| G1.19 | Design of highly specific synthetic miRNAs Laganà A, Forte S, Papa A, Giugno R, Pulvirenti A, Shasha D, Ferro A |
| G1.20 | Emboss on gLite-Grid Donvito G, Di Serio F, Maggi G, Gisel A |
| G1.21 | EMLIB: a C++ Library to Manage Transcripts and Genomic Variations Cereda M, Sironi M, Pozzoli U |
| G1.22 | GAME: a Generic Architecture based on Multiple Experts for bioinformatics applications Armano G, Ledda F, Vargiu E |
| G1.23 | GebbaMA: Archive and Management of Microarray Data Rossi E, Giuliani S, Gamberoni G, Volinia S, Frangiamone G, D'Ascia S |
| G1.24 | Genomics and Biomedical Data Management System Gnocchi M, Milanesi L |
| G1.25 | Guided contig assembly in de novo high-throughput sequencing of bacterial genomes Petrillo M, Cozzuto L, Paolella G |
| G1.26 | Integration of distributed heterogeneous biomolecular data to support biological discovery Masseroli M, Ceri S, Tettamanti L, Campi A, Sormani S |
| G1.27 | MitoZoa: a curated database of mitochondrial genomes of Metazoa specifically developed for genomics and phylogenetic analyses Lupi R, D'Onorio de Meo P, D'Antonio M, Paoletti D, Castrignanò T, Picardi E, Pesole G, Gissi C |
| G1.28 | PROTMINE: a web based tool for the interpretation of clinical proteomic experiments Giacomini M, Petretto A, Ravaschio S, De Nadai S, Melioli G |
| G1.29 | STONE: an Application to Investigate Protein Secondary Structure Transitions Armano G, Manconi A |
| G1.30 | STRING 8 - a global view on proteins and their functional interactions in 630 organisms Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Franceschini A, Roth A, Simonovic M, Bork P, von Mering C |
| G1.31 | The Cell Line Integrated Molecular Authentication (CLIMA) database Romano P, Aresu O, Manniello MA, Cesaro M, Parodi B |
| G1.32 | AMDA, an automated pipeline for Affymetrix data analysis: an update Kapetis D, Vitulli F, Tuana G, Pelizzola M, Ricciardi-Castagnoli P, Maria F, Zolezzi F |
| Group 2 (Thu March 19th, 2009) | |
| Topic: Networks and Systems Biology | |
| Posters associated to oral communications | |
| G2.01 | Estimating the solution space of Metabolic Networks Braunstein A, Mulet R, Pagnani A |
| G2.02 | Multiplexing and demultiplexing signals by E. coli Pasotti L, Quattrocelli M, Galli D, Cusella De Angelis MG, Magni P |
| G2.03 | Simulating signaling pathways: the motile photoresponse of H. salinarum as a case study Felicioli C, Cangelosi D, Cercignani G, Chiarugi D, Deiana N, Fabbiano S, Freschi L, Fulgentini L, Lucia S, Marangoni R |
| G2.04 | Genome-Wide Survey of mixed MicroRNA / Transcription Factor Feed-Forward Regulatory Circuits in Human Re A, Corà D, Taverna D and Caselle M |
| G2.05 | Data fusion based gene function prediction using ensemble methods Re M and Valentini G |
| G2.06 | Pathway analysis in proteomics Restuccia U, Fung E, Muzio M, Zubarev R, Bachi A |
| Posters | |
| G2.07 | Co-expression network games Bonassi S, Fragnelli V, Moretti S, Patrone F |
| G2.08 | Entropic contributions to the splicing process Osella M. Caselle M |
| G2.09 | Independent component analysis to investigate microRNA role in Ewing sarcoma Martignetti L, Zinovyev A, Stoll G, Tirode F, Laud-Duval K, Delattre O, Barillot E |
| G2.10 | Modelling bacterial communities as emerging systems of communication Pongor S, Venturi V |
| G2.11 | Modeling of the bacterial mechanism of methicillin-resistance by a systems biology approach Autiero I, Costantini S, Colonna G |
| G2.12 | Plasticity of the Yeast Transcription Network After the Whole-genome Duplication Grassi L, Fusco D, Cora D, Bassetti B, Caselle M, Cosentino Lagomarsino M |
| G2.13 | TimeDelay-ARACNE: Reverse engineering of gene networks form time-course data by an Information theoretic approach Zoppoli P, Morganella S, Ceccarelli M |
| Topic: Protein structure and function and Computational Proteomics | |
| Posters associated to oral communications | |
| G2.14 | Identification of residue contacts in protein/protein interaction from multi-species data Weigt M, White RA, Szurmant H, Hoch JA, Hwa T |
| G2.15 | Comparison of proteins flexibilities by self-organizing maps: the test case of SH3 and its mutants Fraccalvieri D, Pandini A, Bonati L |
| G2.16 | 3D-Structure Prediction of the Modular Protein Sialoadhesin Using a Multi-step Modelling Strategy Corrada D, D'Ursi P, Botti S, Luperini A, Milanesi L, Rovida E |
| Posters | |
| G2.17 | A method for in-silico validation of protein interactions Barbarini N, Simonelli L, Azzalin A, Comincini S, Bellazzi R |
| G2.18 | A new tool for protein identification by PMF Tiengo A, Barbarini N, Troiani S, Rusconi L, Magni P |
| G2.19 | Binding sites identification in protein structures using ligand-aspecific structural motifs Bianchi V, Ausiello G, Gherardini PF, Helmer-Citterich M |
| G2.20 | Cold-adapted enzymes: structure, stability and function investigated by computational methods Marabotti A, Facchiano A, Aurilia V, Rioux-Dubè JF, Pézolet M, D'Auria S |
| G2.21 | Identification of phosphate binding sites in protein structures Parca L, Ausiello G, Gherardini PF, Helmer-Citterich M |
| G2.22 | Looking into the relationships between the quality of homology models and the accuracy of ligand-protein docking results Bordogna A, Pandini A, Bonati L |
| G2.23 | MOLECULAR DYNAMICS of CFTR: Structural stability and thermodynamics of the first nucleotide binding domain (NBD1) Bisignano P, Moran O |
| G2.24 | Molecular modelling of human Hexokinase I binding to VDAC1 mithocondrial porin Spallarossa A, Pettinati I, Rosano C |
| G2.25 | Protein Folding, Misfolding and Diseases: The I-Mutant Suite Calabrese R, Capriotti E, Fariselli P, Martelli PL, Casadio R |
| G2.26 | QMEANclust: Estimation of protein model quality by combining a composite scoring function with structural density information Benkert P, Schwede T, Tosatto SCE |
| G2.27 | Structural and bioinformatic characterization of an arsenate reductase from Leishmania major Bordo D, Bisacchi D, Mukhopadyay R |
| G2.28 | Structural motifs recurring in different folds recognize the same ligand fragments Ausiello G, Gherardini PF, Gatti E, Incani O, Helmer-Citterich M |
| G2.29 | Studying the intrinsic structural properties of three human prion helices Costantini S, Facchiano AM |
| G2.30 | TESE: Generating specific protein structure test set ensembles Sirocco F, Tosatto SCE |
| G2.31 | Using 3D Animation Software for the analysis of protein motion Zini MF, Loni T, Andrei R, Zoppè M |
| G2.40 | Molecular models for G-quadruplexes Fogolari F, Haridas H, Corazza A, Esposito G, Xodo L |
| Topic: Genome and Molecular Evolution | |
| Posters | |
| G2.32 | Bad habits about homology Marabotti A, Facchiano A |
| G2.33 | Comparative evolutionary analysis of chloroplast genomes Emiliani G, Fondi M, Papaleo MC, Mengoni A, Fani R |
| G2.34 | Environmental variables affect the observed to expected heterozygosity ratio in human populations Fumagalli M, Pozzoli U, Pattini L, Bresolin N, Sironi M |
| G2.35 | In silico comparative analysis of antibiotics RND-efflux pumps in Burkholderia genus Perrin E, Maida I, Papaleo MC, Fani R, Fondi M |
| G2.36 | ISOL@ (the Italian SOLAnaceae genomics resource) evolution: novel insights into the structure and the function of the tomato genome Chiusano ML, D'Agostino N, Di Filippo M, Maselli V, Traini A, Frusciante L |
| G2.37 | Repeated sequences with strong tetraplex-forming potential generate double-strand breaks in yeast and high frequency chromosomal rearrangements in human sperm Beri S, Menozzi G, Rusconi M, Cagliani R, Marinelli M, M. Bonaglia C, Giorda R |
| G2.38 | The Acinetobacter pan-plasmidome Fondi M, Bacci G, Brilli M, Papaleo MC, Mengoni A, Fani R |
| G2.39 | Transcription factors involved in the maintenance of stem cells: comparative analysis among eucaryotes Miele M, Zappa A, Romano P |
| Group 3 (Fri March 20th, 2009) | |
| Topic: Transcriptomics gene expression and microarray analysis | |
| Posters associated to oral communications | |
| G3.01 | Detection of alternative splicing in Vitis vinifera and validation by short sequencing reads Picardi E, Horner D, Chiara M, Pesole G |
| G3.02 | A transcriptional sketch of a human breast cancer by 454 deep sequencing Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Rossi Bernardi L, Albertini A, Lee C, John S. Mattick JS, Zucchi I & de Bellis G |
| G3.03 | A bioinformatics pipeline for microarray analysis: from cell models to breast cancer classification Isella C, Renzulli T, Medico E |
| G3.04 | A new clustering approach for learning transcriptional regulatory networks Archetti F, Giordani I, Mauri G, Messina E |
| G3.05 | Discovering Relational Association Rules for the Characterization of UTR cis-regulatory modules Logisci C, Salvemini E, Turi A, Grillo G, Malerba D, D'Elia D |
| Posters | |
| G3.06 | A new method to integrate gene expression, chromosome location and pathway enrichment in microarray gene expression experiments Martini P, Cagnin S, Romualdi C, Lanfranchi G |
| G3.07 | A simulator of gene regulatory network evolution for validation of biomarker identification methods Di Camillo B, Martini M, Toffolo G |
| G3.08 | A systematic analysis of alternative 3' UTR of human transcripts: improvment of detection of microRNA targets Sales G, Biasiolo M, Romualdi C |
| G3.09 | A-MADMAN: Annotation-based MicroArray Data Meta-ANalysis tool Bisognin A, Coppe A, Ferrari F, Davide R, Bicciato S, Bortoluzzi S |
| G3.10 | Genome-wide Search For Splicing Defects Associated with Amyotrophic Lateral Sclerosis (ALS) Lenzken SC, Vivarelli S, Zolezzi F, Cordero F, Della Beffa C, Calogero RA, Barabino S |
| G3.11 | Improving microRNA Prostate Cancer Target Genes detection Masulli F, Parini A, Rovetta S, Russo G |
| G3.12 | Integration methods for microarray data Risso D, Bisognin A, Romualdi C |
| G3.13 | Possible roles of conserved non-coding sequences and CpG islands in transcriptional regulation of Hox loci Squillario M, Cornero A, Ikeo K, Gojobori T |
| G3.14 | Prognostic value of the hypoxia signature on neuroblastoma Fardin P, Rosasco L, Barla A, Mosci S, Versteeg R, Verri A, Varesio L |
| G3.15 | Tissue Specificity Dependent Sequence Conservation Cornero A, Squillario M, Ikeo K, Gojobori T |
| Topic: Novel methods and algorithms | |
| Posters | |
| G3.16 | A linguistic approach towards the functional characterization of intragenic non-exon sequences Menconi G, Conti V, Puliti A, Sbrana I, Marangoni R |
| G3.17 | Integrated Analysis of microRNA and Gene Expression Data to Reconstruct Regulatory Networks Biasiolo M, Forcato M, Sales G, Coppe A, Bortoluzzi S, Bicciato S |
| G3.18 | An integrated algorithmic procedure for the assessment and discovery of clusters in DNA microarray data Avogadri R, Valentini G, Bertoni A |
| G3.19 | Bioinformatic analisys of SOLiD trancriptome data Albiero A, Vitulo N, Forcato C, Campagna D, Caniato E, Bilardi A, Schiavon R, D'Angelo M, Zimbello R, Valle G |
| G3.20 | FAST: Fast Alignments for Short Tags Del Fabbro C, Morgante M, Policriti P |
| G3.21 | Genome-wide hierarchical classification of gene function Cesa-Bianchi N, Valentini V |
| G3.22 | In-Silico Drug Design and the Molecular Classification of Local Anaesthetics Torrens F, Castellano G |
| G3.23 | IRIS: A Probabilistic Approach to Infer Regulatory Relations in Gene Networks Morganella S, Ceccarelli M, Zoppoli P |
| G3.24 | LVOS-DISTEVOL: a distributed, evolutionary computing system for ligand virtual optimization and screening Piastra M, Spallarossa A, Baracchi S, Di Bernardo D, Rosano C |
| G3.25 | NILARS: an Efficient Algorithm Based on Linear Regression for Inferring Gene Networks Cassandra R, Lauria M |
| G3.26 | TMA-Oriented Tool for Automatic Indentification of Pathological Areas in Human Colon Tissues Viti F, Scaglione S, Merelli I, Beltrame F, Milanesi L |
Scientific Programme
Overview -
Agenda
Keynote Speakers
Scientific Programme
Tutorials
Presentations
Call for Papers
Overview -
Topics
Type of contributions
Deadlines -
Instructions
Special Issue
Registration
Overview
Subscribe mailing list
Registration fees
Registration form
Hotel reservation form
Useful Info
Contacts -
Location
How to reach
Deadlines -
Organization
Scientific Committee
Organizing Committee
Institutes & Societies
Sponsors